SBML2Scilab Outdated XSL
SBML is a machine-readable format for representing models. It's oriented towards describing systems where biological entities are involved in, and modified by, processes that occur over time. An example of this is a network of biochemical reactions. SBML's framework is suitable for representing models commonly found in research on a number of topics, including cell signaling pathways, metabolic pathways, biochemical reactions, gene regulation, and many others. If you want to know more, you can read the Basic Introduction on SBML
Scilab is a scientific software package for numerical computations providing a powerful open computing environment for engineering and scientific applications.
However, this converter should work on simple SBML L2V1 models.
The conversion is performed in one XSLT pass, but using four stylesheets.
SBML elements not supported
- complex units
- SBML Level 3 packages
Information lost in the conversion
- most annotations
To generate a Scilab file from an SBML model, run: Xalan MyModel_sbml.xml sbml_to_scilab.xsl > MyModel.sci You can download the XSL stylesheets in the section below.
You have to download these four XSL stylesheets and put them in the same folder
Getting Help and Support
In case you discover a bug within SBFC or request new features, please let us know. There are two dedicated trackers:
For general discussions about SBFC, please use the forum:
sbfc-forum [at] googlegroups.com.
If you need further support or you wish to develop new modules in SBFC you can contact the team using the following e-mail address:
sbfc-devel [at] googlegroups.com.