BioPAX2BioPAXL3

= Conversion from BioPAX L1/L2 to L3 =

Introduction

 * About BioPAX
 * The main objective of the BioPAX initiative is to develop a data exchange format for biological pathways that is flexible, extensible, optionally encapsulated and compatible with other standards and can be widely adopted in a timely manner.

Documentation
This converter upgrades a BioPAX model from Level 1 or 2 to Level 3.

Download
You can download the BioPAX2BioPAXL3 converter here: .

End users
To run the BioPAX2BioPAXL3 converter you need. After unpacking the zipped file, move to the folder that have been created and run: # Convert BioPAX L1/L2 (any *owl files if you put a folder) to BioPAX L3   # The output file(s) will be in the same folder with extension .owl ./sbfConverter.sh BioPAXModel BioPAX2BioPAXL3 [file.owl | folder]

Developers
To compile BioPAX2BioPAXL3 from source, you also need Apache Ant 1.6.5 or higher.

After editing the source code you can build the jar file by just typing in the SBFC folder: # Generate the jar file ant jar # Generate the java documentation ant javadoc